The Klamath River begins below the Cascade Mountains on the border of California and Oregon. For 257 miles, it flows through forests, mountain ranges, agricultural valleys, and countless communities before reaching the Pacific Ocean just south of Crescent City. As the second largest river in California, the Klamath is home to people and wildlife that have depended on its waters for generations, including the Karuk Tribe, Hoopa Valley Tribe, Klamath Tribes, and Yurok Tribe.

But dam removal is not the end of the story — it is the beginning of a new chapter. Restoring the Klamath watershed will require long-term investment in tributaries, floodplains, water quality, and habitat resilience across the basin. Some of the most important work ahead lies in key tributaries like the Scott River and Shasta River, where restoration can help rebuild strongholds for native fish. At the same time, scientists and restoration practitioners must closely monitor how salmon, steelhead, and other species respond to renewed access to the upper watershed in order to better understand the ecological impacts of dam removal and guide future restoration efforts across the West.

Our work in action | Klamath River · Northern California

Studying a River in Transition: The Klamath River Salmon Monitoring Program

miles of habitat reopened

Chinook salmon passed former Iron Gate Dam in 2025

of historic range reoccupied

As the Klamath River reconnects, understanding how the ecosystem responds is critical. CalTrout and our partners are conducting monitoring efforts throughout the watershed to track how fish populations, water quality, habitat conditions, and ecosystem processes change following dam removal.

The Klamath River Monitoring Program combines cutting-edge science with on-the-ground fieldwork to answer important questions about the river’s recovery: how quickly are salmon and steelhead recolonizing newly accessible habitat? Which tributaries and cold-water refuges are most important for recovery? How are water temperature, sediment movement, and habitat complexity changing over time? What restoration actions will have the greatest long-term impact for native fish?

Using tools like sonar imaging, radio telemetry, netting, and spawning surveys, CalTrout and our partners are building one of the most comprehensive post-dam-removal monitoring efforts ever undertaken in California. The work will help inform future restoration decisions not only on the Klamath, but across rivers throughout the American West.

Just one year after the removal of the Klamath River dams, results from the program have shown thousands of Chinook salmon pushing deep into newly reopened habitat — some reaching more than 360 river miles from the ocean into the Upper Klamath Basin for the first time in over a century. In 2024, our team counted nearly 7,800 Chinook salmon migrating upstream of the former Iron Gate Dam. In 2025, that number climbed to more than 13,000 – a roughly 70% increase in a single year.

Dam removal has created an unprecedented opportunity for salmon recovery across the Klamath Basin. Success will depend not only on recolonization of the Upper Klamath, but also on rebuilding productive strongholds of wild fish in tributaries like the Scott and Shasta rivers.

The Scott River: Restoring a Critical Cold-Water Stronghold

The Scott River is one of the Klamath Basin’s most important salmon and steelhead tributaries. Fed by snowmelt and cold groundwater, the Scott River provides vital spawning and rearing habitat for coho salmon, Chinook salmon, and steelhead. But decades of altered flows, habitat degradation, and changing climate conditions have placed enormous pressure on the river and the species that depend on it.

CalTrout is working with local Tribes, landowners, irrigation districts, agencies, and other partners to restore ecological function throughout the Scott watershed. Our work focuses on improving streamflow, reconnecting floodplains, restoring riparian habitat, increasing groundwater recharge, and creating more resilient conditions for both fish and farming communities. Today, that approach is moving from agreement to landscape-scale implementation, with projects that are physically rebuilding floodplains, improving fish passage, and restoring year-round habitat while sustaining the working landscapes and communities that are part of the Scott River watershed.

A major focus of this work is collaboration. In recent years, CalTrout helped facilitate landmark agreements between agricultural stakeholders and Tribal partners aimed at developing long-term, locally driven solutions for water management and watershed restoration. These efforts demonstrate that durable restoration outcomes are possible when communities work together around a shared vision for healthy rivers and resilient working landscapes.


Projects on the Scott

The Shasta River: Rebuilding a River While Sustaining a Working Landscape

The Shasta River is another one of the Klamath Basin’s most important wild salmon and steelhead-producing tributaries, with an average run size of more than 43,000 Chinook salmon returning between 1930 and 1937. Fed by cold springs and groundwater originating in the volcanic landscape around Mount Shasta, this relatively small river historically supported remarkably productive runs of Chinook salmon. That same cold-water influence gives the Shasta exceptional potential for recovery.

Today, however, altered hydrology, habitat loss, barriers to fish passage, and changes in water management limit the amount and quality of habitat available to salmon and steelhead. The average Chinook salmon returns over the last decade have been 16% of the 1930 to 1937 average. CalTrout is working with landowners, Tribes, agencies, and conservation partners to reconnect spring-fed habitats, restore side channels and floodplains, improve fish passage, and develop water-management solutions that benefit both fish and working lands.

By restoring the connection between the Shasta’s cold-water sources and the habitats salmon need throughout their life cycle, we are working toward a river that can once again support abundant, resilient wild fish populations.

As salmon once again gain access to the upper Klamath Basin, tributaries like the Scott and Shasta rivers will play an essential role in determining the long-term success of recovery efforts. Together, these rivers represent some of the best opportunities to rebuild resilient, connected habitat networks across the Klamath watershed for generations to come.

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The Klamath is just the start

Photo: Michael Wier

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